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Sturgeons are sensitive to environmental pressures and therefore valuable indicators for healthy rivers. This is why the ICPDR has endorsed sturgeons as flagship species. There are six species of sturgeons native in the Danube River Basin, but the survival of these ancient fish is threatened by a range of issues. Through the "Danube Sturgeon Task Force", the ICPDR contributes to actions such as the protection of habitats, the development of migration aids, the breeding of healthy stocks in sheltered facilities, or the struggle against illegal fishing and caviar trade.

The Danube is very significant to Romania, since the country is located almost entirely within the Danube River Basin. The Romanian section covers almost a third of the surface area of the Basin, and over a third of the river’s length flows through the country. Crucially, the Romanian (and also Ukrainian) Danube is the end carrier of all wastewater discharges into the Black Sea.

The habitats created by the Danube and its tributaries host a unique mix of species. But many habitats are degraded by man-made changes to the river profile and width, water depth and flow velocity following the construction of dams, weirs and canals. Many migratory fish including sturgeon species and the Danube Salmon are endangered or close to extinction by being disconnected from their spawning grounds and habitats or by being over-exploited.

As both the largest remaining natural wetland and second largest river delta in Europe, the Danube Delta is one of the continent's most valuable habitats for wetland wildlife. Pollution and discharge manipulation from upstream has a huge effect on this area of high biodiversity, plus the delta continues to change ecologically itself – the Danube Delta spreads seaward at a rate of 10 to 25 metres every year.

Covering an area of 157,186 km², the Tisza River Basin is the largest sub-basin of the Danube River Basin. The Tisza River is the longest tributary of the Danube (966 km), and second largest in terms of flow after the Sava. The countries of the Tisza Basin (Ukraine, Romania, Hungary, Slovakia, Serbia) agreed to close transboundary co-operation, aiming to achieve integrated water resources management of the Basin.

A river does not end at its bank. The Danube and its tributaries form many diverse riverine habitats, including intricate networks of water bodies, creeks and channels, floodplain forests, water meadows, lakes, gravel islands, sandy banks and the unique delta habitats by the shores of the Black Sea.

The Danube and its tributaries host a variety of fascinating and diverse ecological territories with many unique plants and animals. The rich and unique biodiversity and riverine habitats have been under severe pressure due to human activities for centuries. However, today the protection of environment and biodiversity is on the political agenda of the different Danubian States.